PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g103760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 364aa    MW: 41048.5 Da    PI: 8.426
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g103760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-17103152155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Csa11g103760.1 103 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 152
                     78*******************......55************************997 PP

2AP2378.6e-12195252155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV+ +k  grW++++  + + +     +  +++lg f+t+ eAa+a+++a+ k +g
  Csa11g103760.1 195 SKFRGVTLHK-CGRWESRLGQFLN-KkynyFKvLYVYLGLFDTEIEAARAYDKAAIKCNG 252
                     79********.7******777544.34556446**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-9103152IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-16103161IPR016177DNA-binding domain
PROSITE profilePS5103217.899104160IPR001471AP2/ERF domain
CDDcd000182.47E-11104161No hitNo description
SMARTSM003802.7E-31104166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17104160IPR001471AP2/ERF domain
PfamPF008471.6E-7195252IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-13195261IPR016177DNA-binding domain
CDDcd000182.81E-21195260No hitNo description
SMARTSM003803.1E-25196266IPR001471AP2/ERF domain
PROSITE profilePS5103214.565196260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-13196260IPR001471AP2/ERF domain
PRINTSPR003671.7E-5197208IPR001471AP2/ERF domain
PRINTSPR003671.7E-5242262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MWNLNDSPDH HEASDSRGNR VGHVSNYMSQ STTWVSSVPP VTRNFFPSQV MEPGVREIYG  60
SDFNRSQSGG KSDPSGSGRP DELAPEISPP LKKSRRGPRS RSSQYRGVTF YRRTGRWESH  120
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFD IEDYVDDLKQ MGNLTKEEFM  180
HVLRRQSTGF PRGSSKFRGV TLHKCGRWES RLGQFLNKKY NYFKVLYVYL GLFDTEIEAA  240
RAYDKAAIKC NGKDAVTNFD PKVYEQEELI SPELKWNDYN LDLSLGESNS EELGFKSDIT  300
SLTNRIRDEE RLLGSDLSLA MTTTAVRSDG GGSRVGMAAS SGFSHPSSPW HHPTPNNFHF  360
FRH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761450.0AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17.
GenBankAY0882380.0AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence.
GenBankBT0292060.0BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444685.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ9FH950.0TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLR0EWM50.0R0EWM5_9BRAS; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80026280.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-176target of early activation tagged (EAT) 3